GRB browser — danRer11
Locus
Gene
Gene-search flank (kb around TSS)
Or coords (chrN:start-end)
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Reset view + clear saved state
GRB definition
DI v2 (target-score, latest)
DI v2 (gene-aware)
DI raw (3-of-4 consensus)
DI clipped
DI permissive (1-of-4)
CNE-only v7 (grb_detection)
Navigate
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Zoom
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Colour scale
Palette
Blue-yellow
Amber
Signal cap (saturates at)
Power degree (1 = linear, 1/2 = sqrt)
1/3
1/2
1
2
3
Cell grid lines
Row order
Stage + clustered (current)
Tree: root → leaves
Tree: lineage blocks
Tree: per-lineage (progenitors repeated)
Peak filter
Min peak signal (0 = show all)
Keep a peak if any sample is above this.
Sample above threshold among
Selected samples
All samples (incl. hidden)
Tracks
Tick a lineage to include it and all branches below it.
Timepoints
hpf4
hpf5
hpf6
hpf7
hpf8
hpf9
hpf10
hpf11
hpf12
hpf14
hpf18
hpf20
hpf22
hpf24
hpf30
hpf34
hpf38
hpf42
hpf48
hpf72
Expression panel
Daniocell
Bgee
Colour scale
Absolute log TPM (true levels)
log2 FC vs row median (best for HK vs tissue-specific)
Row-normalised (each gene / its max)
Row z-score (per-gene mean-centred)
NMF
Rank
Compute NMF
Copy permalink
Peak under cursor:
Genes in window
Expression
NMF
H matrix peak under cursor:
Dominant component per sample